Agentic NI  - The molecular tinkering 

Generative AI produces new content, while agentic AI produces a series of actions or decisions. In our case, the decision is made by living plant tissue itself. Therefore, we name it agentic NI or Agentic Natural Intelligence.

In this section, we name its criteria and will illustrate examples in more detail.

 Examples:

 A) Pyruvate dehydrogenase E1 component subunit beta
Essential for obtaining energy from carbohydrates

Fig1: Shows IGV-pattern found in the second last intron of the CD of E1.
It is easy to see that differential tendencies are realised along the haploid strings in red puniceus or yellow australis; in red, it is more TC-like. In yellow, it is the contrary, more C-like. The fact is that thousands of cells in the same tissue (here of more than one individual) "decided" on either the red or yellow puniceus feature. This decision is quantum mechanical-like. This outcome is 

a) information, 

b) decisive, 

and 

c) targets the activity of the hosting gene. It is challenging the whole notion we have so far of gene regulation. It is not only regulation, but it is, at the same time, an acting decision made by these interacting genes in the whole pathway and is heritable.  

Fig2: Here is an example of Short Tandem Repeat diversity in an intron of the membrane protein belonging to the Endoplasmatic Reticulum. In the IGV, one can group the DNA window into red and non-red taxa. The resulting hairpins are generally more extended in red forms.
The TATA-CACA-TATA-GAGA series is seen. CACA and GAGA can be changed to TATA and vice versa. The longer the TATA string, the longer the hairpin means more activity. In the introns of each well-specialized protein, such STRs are detectable. It is argued that STRs within the introns are heritable and semi-reversible and have been shown to regulate gene expression.

Third Example Diplacus parviflorus R2R3MYB2 stem-loop-stem hairpin

In the second intron you may find this hairpin string:

 Fig3:

Looped hairpin realized in D. parviflorus: a very long hairpin (miRNA). All mainland and coastal Diplacus have a {TATATATAG} string. All parviflorus individuals have the looped string. To get by chance from D. puniceus string a parviflorus string is p < 0.000,000,000,000,000,014 --> 0. In other words, one will never get such a two-stemmed hairpin of this length by chance.
Quantum logic is pivotal in this process, offering a unique perspective that defies conventional probability.
The algorithm is like this.
1) Decide where the head (loop) of the new hairpin is: --> GTTAAAT
2) Build an inverse left stem
3) Delete the old 15 (AT)G and put there {GCCTAAAACTCTATCTGCCTGTCTATATA} instead.
This way, one gets a stable, functional stem-loop-stem hairpin of considerable length.
The above suggestion is the easiest way to get such a long and stable hairpin. Noteworthy, such structures have to appear as a whole in few steps quickly.
Do any alternative structures of similar value exist in real life? Yes, there exist.
1) stem-loop-stem the loop is inversed TAAATTG
2) extra long TATA strings 20(AT) in one case realized

CTCTCTCTATATATATATATATATATATATATATATATATTTATATATA

SRX25846405

Diplacus parviflorus x Diplacus longiflorus 

GCCTAAAACTCTATCTGCCTGTCTATATATCTCGTTAAATGATATATAGACAGGCAGATAGAGTTTTAGGT

                   ∆

GCCTAAAACTCTATCTGCCTGTCTATATA

 15x(AT)G  of red Diplacus puniceus is replaced by AAAACT ...

(DRAFT)

As soon as the information is available online, we will lead you through the process from a yellow-flowered island, D. longiflorus, intermediate stages and D. parviflorus hairpin development. (February 2025)

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